NDB ID: DR0013


Title:MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE
Molecular Description:5'-R(GpUpGpGpUpGpApApGpUpCpGpCpGpG)-3'
Structural Features:A DOUBLE HELIX, BULGES, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsA, C: G U G G U G A A G U C G C G G
ChainsB, D: C G C G U C A C A C C A C C
Primary Citation:Zhao, F., Zhao, Q., Blount, K.F., Han, Q., Tor, Y., Hermann, T.
Molecular recognition of RNA by neomycin and a restricted neomycin derivative
Angew.Chem.Int.Ed.Engl. , 44, pp. 5329 - 5334, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 50.740b = 50.750c = 144.720(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:EVAPORATION
Drop:MPD, magnesium acetate, cacodylate, h2o
Reservoir:MPD, magnesium acetate, cacodylate, h2o
Refinement:The structure was refined using the CNS program. The R value is 23.3 for 5581 reflections in the resolution range 8.0 to 3.0 Ångstroms with I > 0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1ZZ5

PubMed: 16037995




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