<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>15</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="15" comment="sequence number in pdb file">
            2    3    4    5    6    7    8    9   10   11 
           12   13   14   15   16 
         </numbering-table>
         <seq-data>
            GUGGUGAAGU CGCGG
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>52.233 20.302 -1.025</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>U</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>52.750 19.218 0.036</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>52.684 20.518 4.950</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>53.023 19.135 5.695</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>51.159 18.205 10.413</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="64">
                  <atom-type> P  </atom-type>
                     <coordinates>51.404 16.664 10.783</coordinates>
               </atom>
               <atom serial="72">
                  <atom-type> O3'</atom-type>
                     <coordinates>48.519 14.143 14.153</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="87">
                  <atom-type> P  </atom-type>
                     <coordinates>49.306 12.746 14.275</coordinates>
               </atom>
               <atom serial="95">
                  <atom-type> O3'</atom-type>
                     <coordinates>46.513 8.272 14.503</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="107">
                  <atom-type> P  </atom-type>
                     <coordinates>47.478 6.994 14.385</coordinates>
               </atom>
               <atom serial="115">
                  <atom-type> O3'</atom-type>
                     <coordinates>46.031 2.476 12.532</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="130">
                  <atom-type> P  </atom-type>
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               </atom>
               <atom serial="138">
                  <atom-type> O3'</atom-type>
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               <position>8</position>
               <base-type>A</base-type>
               <atom serial="152">
                  <atom-type> P  </atom-type>
                     <coordinates>49.977 -0.950 8.897</coordinates>
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               <atom serial="160">
                  <atom-type> O3'</atom-type>
                     <coordinates>52.143 -4.302 5.475</coordinates>
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            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="174">
                  <atom-type> P  </atom-type>
                     <coordinates>52.254 -2.842 4.819</coordinates>
               </atom>
               <atom serial="182">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>10</position>
               <base-type>U</base-type>
               <atom serial="197">
                  <atom-type> P  </atom-type>
                     <coordinates>56.213 -3.470 0.271</coordinates>
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               <atom serial="205">
                  <atom-type> O3'</atom-type>
                     <coordinates>59.440 -1.327 -2.841</coordinates>
               </atom>
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               <position>11</position>
               <base-type>C</base-type>
               <atom serial="217">
                  <atom-type> P  </atom-type>
                     <coordinates>60.846 -1.397 -2.069</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>64.489 1.989 -3.618</coordinates>
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               <position>12</position>
               <base-type>G</base-type>
               <atom serial="237">
                  <atom-type> P  </atom-type>
                     <coordinates>65.883 1.565 -2.931</coordinates>
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               <atom serial="245">
                  <atom-type> O3'</atom-type>
                     <coordinates>69.107 5.170 -1.053</coordinates>
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            </base>
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               <position>13</position>
               <base-type>C</base-type>
               <atom serial="260">
                  <atom-type> P  </atom-type>
                     <coordinates>70.295 4.257 -0.471</coordinates>
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               <atom serial="268">
                  <atom-type> O3'</atom-type>
                     <coordinates>72.815 6.013 3.407</coordinates>
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            </base>
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               <position>14</position>
               <base-type>G</base-type>
               <atom serial="280">
                  <atom-type> P  </atom-type>
                     <coordinates>73.846 4.792 3.575</coordinates>
               </atom>
               <atom serial="288">
                  <atom-type> O3'</atom-type>
                     <coordinates>75.048 3.695 8.542</coordinates>
               </atom>
            </base>
            <base>
               <position>15</position>
               <base-type>G</base-type>
               <atom serial="303">
                  <atom-type> P  </atom-type>
                     <coordinates>75.769 2.286 8.747</coordinates>
               </atom>
               <atom serial="311">
                  <atom-type> O3'</atom-type>
                     <coordinates>75.426 -0.763 12.816</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>7</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>15</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>15</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
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                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 21.711</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 57.895</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 94.079</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 130.263</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 166.447</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 202.632</coordinates>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 238.816</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 311.184</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 347.368</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>0.000 383.553</coordinates>
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               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>0.000 419.737</coordinates>
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               <ss-base-coord>
                  <base-id><position>12</position></base-id>
                  <coordinates>0.000 455.921</coordinates>
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               <ss-base-coord>
                  <base-id><position>13</position></base-id>
                  <coordinates>0.000 492.105</coordinates>
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               <ss-base-coord>
                  <base-id><position>14</position></base-id>
                  <coordinates>0.000 528.289</coordinates>
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               <ss-base-coord>
                  <base-id><position>15</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>14</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="14" comment="sequence number in pdb file">
           21   22   23   24   25 
           26   27   28   29   30   31   32   33   34 
         </numbering-table>
         <seq-data>
            CGCGU CACACCACC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="331">
                  <atom-type> O3'</atom-type>
                     <coordinates>62.363 -0.387 15.707</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="343">
                  <atom-type> P  </atom-type>
                     <coordinates>61.476 0.743 14.981</coordinates>
               </atom>
               <atom serial="351">
                  <atom-type> O3'</atom-type>
                     <coordinates>62.694 5.517 15.039</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="366">
                  <atom-type> P  </atom-type>
                     <coordinates>61.405 6.133 14.290</coordinates>
               </atom>
               <atom serial="374">
                  <atom-type> O3'</atom-type>
                     <coordinates>62.337 10.475 11.668</coordinates>
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            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="386">
                  <atom-type> P  </atom-type>
                     <coordinates>61.019 10.904 10.853</coordinates>
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               <atom serial="394">
                  <atom-type> O3'</atom-type>
                     <coordinates>60.920 13.257 6.635</coordinates>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>59.455 13.415 5.983</coordinates>
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               <atom serial="417">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.612 13.052 0.661</coordinates>
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               <position>6</position>
               <base-type>C</base-type>
               <atom serial="429">
                  <atom-type> P  </atom-type>
                     <coordinates>56.026 13.055 0.867</coordinates>
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                  <atom-type> O3'</atom-type>
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               <position>7</position>
               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>52.178 10.860 -2.594</coordinates>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>47.693 7.922 -3.992</coordinates>
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               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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            <str-annotation>
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               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
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      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>13</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
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                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>12</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
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                  <base-id-3p>
                     <base-id>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>13</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>14</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>13</position>
                     </base-id>
                  </base-id-3p>
                  <length>6</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <length>6</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
