NDB ID: DR0026


Title:HIV-1 DIS KISSING-LOOP IN COMPLEX WITH LIVIDOMYCIN
Molecular Description:5'-R(CpUp(5BU)pGpCpUpGpApApGpUpGpCpApCp
ApCpApGpCpApApG)-3'
Structural Features:SINGLE STRAND, hairpin loop
Nucleic Acid Sequence:
ChainsA, B: C U (5BU) G C U G A A G U G C A C A C A G C A A G
Primary Citation:Ennifar, E., Paillart, J.C., Bodlenner, A., Walter, P., Weibel, J.-M., Aubertin, A.-M., Pale, P., Dumas, P., Marquet, R.
Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.
Nucleic Acids Res. , 34, pp. 2328 - 2339, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21
Cell Constants:
a = 27.137b = 115.335c = 95.254(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Refinement:The structure was refined using the CNS 1.1 program. The R value is 24.5 for 26457 reflections in the resolution range 9.94 to 1.80 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 2FD0

PubMed: 16679451




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