NDB ID: GDJB29


Title:CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY
Molecular Description:5'-D(CpCpApApCpGpTpTpGpG)-3'
ANTHRAMYCIN
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DC) (DA) (DA) (DC) (DG) (DT) (DT) (DG) (DG)
Primary Citation:Kopka, M.L., Goodsell, D.S., Baikalov, I., Grzeskowiak, K., Cascio, D., Dickerson, R.E.
Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry , 33, pp. 13593 - 13610, 1994.
Experimental Information:X-RAY DIFFRACTION
Space Group: 32   1
Cell Constants:
a = 23.950b = 23.950c = 88.890(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 21.2 for 1212 reflections in the resolution range 8.000 to 2.300 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 274D

PubMed: 7947769




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