NDB ID: GDL001


Title:MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1
Molecular Description:5'-D(CpGpCpGpApTpApTpCpGpCpG)-3'
NETROPSIN
CONFORMATION 1
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: C G C G A T A T C G C G
Primary Citation:Coll, M., Aymami, J., Van Der Marel, G.A., Van Boom, J.H., Rich, A., Wang, A.H.-J.
Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment
Biochemistry , 28, pp. 310 - 320, 1989.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.480b = 41.260c = 66.880(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, Na Cacodylate, MgCl2, SPERMINE
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 20.2 for 1848 reflections in the resolution range 20.000 to 2.400 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.Z))

Asymmetric Unit coordinates (cif format, Unix compressed(.Z))

Biological Unit coordinates (pdb format)

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification




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