NDB ID: GDL008


Title:THE STRUCTURE OF DAPI BOUND TO DNA
Molecular Description:5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
4'-6-DIAMIDINE-2-PHENYL INDOLE
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Larsen, T.A., Goodsell, D.S., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
The structure of DAPI bound to DNA.
J.Biomol.Struct.Dyn. , 7, pp. 477 - 491, 1989.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.350b = 40.710c = 66.530(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 22.2 for 2541 reflections in the resolution range 10.000 to 2.400 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1D30

PubMed: 2627296




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