NDB ID: GDL053
Title:
STRUCTURE OF A D(CGCGAATTCGCG)2-SN7167 COMPLEX
Molecular Description:
5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
SN7167 COMPLEX
Structural Features:
B DOUBLE HELIX
Nucleic Acid Sequence:
Chain
s
A,B:
(DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:
Squire, C.J., Clark, G.R., Denny, W.A.
Minor groove binding of a bis-quaternary ammonium compound: the crystal structure of SN 7167 bound to d(CGCGAATTCGCG)2.
Nucleic Acids Res.
,
25
, pp. 4072 - 4078, 1997.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
2
1
2
1
2
1
Cell Constants:
a = 24.560
b = 40.150
c = 65.680
(Ångstroms)
= 90.00
= 90.00
= 90.00
(degrees)
Refinement:
The structure was refined using the X-PLOR program. The R value is 17.8 for 1888 reflections in the resolution range 8.000 to 2.600 Ångstroms with Fobs > 2.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
328D
PubMed:
9321660
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