NDB ID: PD0011


Title:PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA
Molecular Description:
RESTRICTION ENDONUCLEASE (E.C.3.1.21.4)/DNA COMPLEX
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsC, D: (DT) (DG) (DA) (DC) (DC) (DA) (DG) (I5C) (DT) (DG) (DG) (DT) (DC)
Protein Sequence:
ChainsA, B: Click here for sequence.
Primary Citation:Horton, J.R., Bonventre, J., Cheng, X.
How is modification of the DNA substrate recognized by the PvuII restriction endonuclease?
J.Biol.Chem. , 379, pp. 451 - 458, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 95.800b = 86.300c = 48.500(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 18.8 for 115233 reflections in the resolution range 19.5 to 1.76 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 2PVI

PubMed: 9628337




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