NDB ID: PD0053


Title:LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA
Molecular Description:URACIL-DNA GLYCOSYLASE/DNA COMPLEX
Structural Features:RH DOUBLE HELIX, FLIPPED-OUT BASE, OVERHANGING BASE
Nucleic Acid Sequence:
ChainA:(DC) (DT) (DG) (DT) (AAB) (DA) (DT) (DC) (DT) (DT)
ChainB:(DA) (DA) (DA) (DG) (DA) (DT) (DA) (DA) (DC) (DA) (DG)
Protein Sequence:
ChainE: Click here for sequence.
Primary Citation:Parikh, S.S., Mol, C.D., Slupphaug, G., Bharati, S., Krokan, H.E., Tainer, J.A.
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.
EMBO J. , 17, pp. 5214 - 5226, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   2
Cell Constants:
a = 120.300b = 48.800c = 65.600(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 18.4 for 17195 reflections in the resolution range 20.0 to 2.25 Ångstroms with Fobs > 2. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2SSP

PubMed: 9724657




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