NDB ID: PD0093


Title:HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA
Molecular Description:
MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE (E.C.4.2.99.18)/DNA COMPLEX
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsX,U:(DG) (DC) (DT) (DA) (DC) (3DR) (DG) (DA) (DT) (DC) (DG)
ChainsY,V:(DC) (DG) (DA) (DT) (DC) (DG) (DG) (DT) (DA) (DG) (DC)
Protein Sequence:
ChainsB,A: Click here for sequence.
Primary Citation:Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.
DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected
Nature , 403, pp. 451 - 456, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41
Cell Constants:
a = 122.85b = 122.85c = 107.07(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 19.0 for 11215 reflections in the resolution range 20.0 to 2.95 Ångstroms with Fobs > 3. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1DE8

PubMed: 10667800




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