NDB ID: PD0094


Title:HUMAN APE1 ENDONUCLEASE WITH BOUND ABASIC DNA AND MN2+ ION
Molecular Description:
MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE (E.C.4.2.99.18)/DNA COMPLEX
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsX,U:(DC) (DT) (DA) (DC)
ChainsY,V:(3DR) (DG) (DA) (DT) (DC)
ChainsZ,W:(DG) (DA) (DT) (DC) (DG) (DG) (DT) (DA) (DG)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.
DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
Nature , 403, pp. 451 - 456, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 90.06b = 98.35c = 101.05(Ångstroms)
= 90.0 = 90.0 = 90.0(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 18.3 for 12390 reflections in the resolution range 20.0 to 3.0 Ångstroms with Fobs > 3.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1DE9

PubMed: 10667800




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