NDB ID: PD0127


Title:CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
Molecular Description:
URACIL-DNA GLYCOSYLASE (E.C.3.2.2.3)/DNA COMPLEX
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainB:(DT) (DG) (DT) (P2U) (DA) (DT) (DC) (DT) (DT)
ChainC:(DA) (DA) (DA) (DG) (DA) (DT) (DA) (DA) (DC) (DA)
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Parikh, S.S., Walcher, G., Jones, G.D., Slupphaug, G., Krokan, H.E., Blackburn, G.M., Tainer, J.A.
Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA , 97, pp. 5083 - 5088, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 48.655b = 64.815c = 94.964(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.6 for 26133 reflections in the resolution range 20.0 to 1.8 Ångstroms with I > 1.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1EMH

PubMed: 10805771




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