NDB ID: PD0254


Title:CRYSTAL STRUCTURE OF A TRAPPED REACTION INTERMEDIATE OF THE DNA REPAIR ENZYME ENDONUCLEASE VIII WITH BROMINATED-DNA
Molecular Description:
ENDONUCLEASE VIII (E.C.3.2.-.-)/DNA Complex
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainB:Click here for sequence.
ChainC:Click here for sequence.
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Zharkov, D.O., Golan, G., Gilboa, R., Fernandes, A.S., Gerchman, S.E., Kycia, J.H., Rieger, R.A., Grollman, A.P., Shoham, G.
Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate.
EMBO J. , 21, pp. 789 - 800, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 43   2
Cell Constants:
a = 76.495b = 76.495c = 164.310(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 14.9 for 120771 reflections in the resolution range 10.00 to 1.25 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1K3X

PubMed: 11847126




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