NDB ID: PD0317


Title:CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
Molecular Description:
DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsC,E:(DG) (DG) (DA) (DT) (DC) (DA) (DG) (DC) (DG) (DA)
ChainsD,F:(DA) (DC) (DG) (DT) (DC) (DG) (DC) (DT) (DG) (DA) (DT) (DC) (DC) (DG)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Johnson, S.J., Taylor, J.S., Beese, L.S.
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
Proc.Natl.Acad.Sci.USA , 100, pp. 3895 - 3900, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 31
Cell Constants:
a = 91.681b = 91.681c = 190.116(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 21.8 for 96536 reflections in the resolution range 39.70 to 1.95 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1LV5

PubMed: 12649320




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