NDB ID: PD0330


Title:LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Molecular Description:NUCLEOSOME CORE PARTICLE
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsI,J:(DA) (DT) (DC) (DA) (DA) (DT) (DA) (DT) (DC) (DC) (DA) (DC) (DC) (DT) (DG) (DC) (DA) (DG) (DA) (DT) (DT) (DC) (DT) (DA) (DC) (DC) (DA) (DA) (DA) (DA) (DG) (DT) (DG) (DT) (DA) (DT) (DT) (DT) (DG) (DG) (DA) (DA) (DA) (DC) (DT) (DG) (DC) (DT) (DC) (DC) (DA) (DT) (DC) (DA) (DA) (DA) (DA) (DG) (DG) (DC) (DA) (DT) (DG) (DT) (DT) (DC) (DA) (DG) (DC) (DG) (DG) (DA) (DA) (DT) (DT) (DC) (DC) (DG) (DC) (DT) (DG) (DA) (DA) (DC) (DA) (DT) (DG) (DC) (DC) (DT) (DT) (DT) (DT) (DG) (DA) (DT) (DG) (DG) (DA) (DG) (DC) (DA) (DG) (DT) (DT) (DT) (DC) (DC) (DA) (DA) (DA) (DT) (DA) (DC) (DA) (DC) (DT) (DT) (DT) (DT) (DG) (DG) (DT) (DA) (DG) (DA) (DA) (DT) (DC) (DT) (DG) (DC) (DA) (DG) (DG) (DT) (DG) (DG) (DA) (DT) (DA) (DT) (DT) (DG) (DA) (DT)
Protein Sequence:
ChainsA,E: Click here for sequence.
ChainsB,F: Click here for sequence.
ChainsC,G: Click here for sequence.
ChainsD,H: Click here for sequence.
Primary Citation:Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.
Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands
J.MOL.BIOL. , 326, pp. 371 - 380, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 106.719b = 109.196c = 177.353(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 22.3 for 58997 reflections in the resolution range 60. to 2.65 Ångstroms with I > 2. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1M1A

PubMed: 12559907




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