NDB ID: PD0389


Title:CRYSTAL STRUCTURE COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG AND AN ABASIC SITE CONTAINING DNA
Molecular Description:
Formamidopyrimidine-DNA glycosylase(E.C.3.2.2.23)/DNA
Structural Features:B DOUBLE HELIX, overhanging base
Nucleic Acid Sequence:
ChainD:Click here for sequence.
ChainE:Click here for sequence.
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Pereira de Jesus, K., Serre, L., Zelwer, C., Castaing, B.
Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA.
Nucleic Acids Res. , 33, pp. 5936 - 5944, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   21   2
Cell Constants:
a = 92.150b = 92.150c = 142.530(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 21.5 for 48703 reflections in the resolution range 35. to 1.9 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1NNJ

PubMed: 16243784




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