NDB ID: PD0391


Title:CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE (TDP1) IN COMPLEX WITH VANADATE, DNA AND A HUMAN TOPOISOMERASE I-DERIVED PEPTIDE
Molecular Description:
tyrosyl-DNA phosphodiesterase 1/DNA Complex
Structural Features:SINGLE STRAND
Nucleic Acid Sequence:
ChainsD,F:(DA) (DG) (DA) (DG) (DT) (DT)
Protein Sequence:
ChainsA,B: Click here for sequence.
ChainC: Click here for sequence.
Primary Citation:Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.
Crystal structure of a transition state mimic for Tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide
Chem.Biol. , 10, pp. 139 - 147, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 49.803b = 104.719c = 193.924(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 20.6 for 41018 reflections in the resolution range 95.35 to 2.30 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Links

The RCSB Protein Data Bank: 1NOP

PubMed: 12618186




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey