NDB ID: PD0403


Title:CRYSTAL STRUCTURE OF THE PERIPLASMIC ENDONUCLEASE VVN COMPLEXED WITH OCTAMER DOUBLE STRANDED DNA
Molecular Description:Nuclease (E.C.3.1.-.-)
Structural Features:B DOUBLE HELIX, NICKED
Nucleic Acid Sequence:
ChainsC,D,F:(DG) (DC) (DG) (DA) (DT) (DC) (DG) (DC)
ChainE:(DG) (DC) (DG) (DA) (DT) (DC)
ChainG:(DG) (DC)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Li, C.-L., Hor, L.-I., Chang, Z.-F., Tsai, L.-C., Yang, W.-Z., Yuan, H.S.
DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site.
Embo J. , 22, pp. 4014 - 4025, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 53.74b = 50.11c = 89.61(Ångstroms)
= 90.00 = 97.53 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 19.1 for 20729 reflections in the resolution range 19.78 to 2.30 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1OUP

PubMed: 12881435




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