NDB ID: PD0427


Title:STRUCTURE OF A NON-COVALENT ENDONUCLEASE III-DNA COMPLEX
Molecular Description:Endonuclease III/5'-D(ApApGpApCpGp(5IU)p
GpGpApC)-3'/5'-D(Gp(5IU)pCpCpAp(3DR)pGp
(5IU)pCpT)-3'
Structural Features:B DOUBLE HELIX, OVERHANGING BASE
Nucleic Acid Sequence:
ChainB:(DA) (DA) (DG) (DA) (DC) (DG) (5IU) (DG) (DG) (DA) (DC)
ChainC:(DT) (DG) (5IU) (DC) (DC) (DA) (3DR) (DG) (5IU) (DC) (DT)
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Fromme, J.C., Verdine, G.L.
Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
Embo J. , 22, pp. 3461 - 3471, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   2
Cell Constants:
a = 66.321b = 105.896c = 41.518(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 21.4 for 17052 reflections in the resolution range 29.31 to 2.50 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1P59

PubMed: 12840008




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