NDB ID: PD0461


Title:URACIL DNA GLYCOSYLASE BOUND TO A CATIONIC 1-AZA-2'-DEOXYRIBOSE-CONTIANING DNA
Molecular Description:
Uracil-DNA glycosylase(E.C.3.2.2.-)/DNA Complex
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainB:(DT) (DG) (DT) (NRI) (DA) (DT) (DC) (DT) (DT)
ChainC:(DA) (DA) (DA) (DG) (DA) (DT) (DA) (DA) (DC) (DA)
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Bianchet, M.A., Seiple, L.A., Jiang, Y.L., Ichikawa, Y., Amzel, L.M., Stivers, J.T.
Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase.
Biochemistry , 42, pp. 12455 - 12460, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 48.640b = 65.890c = 99.410(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 19.0 for 24682 reflections in the resolution range 36.52 to 1.9 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1Q3F

PubMed: 14580190




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