NDB ID: PD0531


Title:K38A ECORV BOUND TO CLEAVED DNA AND MN2+: P1 CRYSTAL FORM
Molecular Description:Type II restriction enzyme EcoRV/5'-D(Ap
ApApGpApT)-3'/5'-D(pApTpCpTpT)-3'
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsC,E:(DA) (DA) (DA) (DG) (DA) (DT)
ChainsD,F:(DA) (DT) (DC) (DT) (DT)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Horton, N.C., Perona, J.J.
DNA cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites
Biochemistry , 43, pp. 6841 - 6857, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 47.708b = 48.627c = 63.544(Ångstroms)
= 96.68 = 108.94 = 107.33(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.4 for 74930 reflections in the resolution range 20. to 1.5 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1SX5

PubMed: 15170321




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