NDB ID: PD0532


Title:ECORV BOUND TO COGNATE DNA AND MN2+
Molecular Description:Type II restriction enzyme EcoRV/5'-D(C
ApApGpApTpApTpCpTpT)-3'
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsC,D:(DC) (DA) (DA) (DG) (DA) (DT) (DA) (DT) (DC) (DT) (DT)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Horton, N.C., Perona, J.J.
DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites
Biochemistry , 43, pp. 6841 - 6857, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 47.800b = 49.100c = 63.700(Ångstroms)
= 96.90 = 108.90 = 107.10(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.3 for 23851 reflections in the resolution range 20. to 2.15 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1SX8

PubMed: 15170321




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