NDB ID: PD0539


Title:HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE INDOLOCARBAZOLE SA315F AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX
Molecular Description:DNA topoisomerase I/5'-D(ApApApApApGpAp
CpTpT)-3'
Structural Features:B DOUBLE HELIX, BASE INTERCALATED
Nucleic Acid Sequence:
ChainB:Click here for sequence.
ChainC:Click here for sequence.
ChainD:Click here for sequence.
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.
Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex
J.Med.Chem. , 48, pp. 2336 - 2345, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 57.382b = 115.965c = 73.547(Ångstroms)
= 90.00 = 93.71 = 90.00(degrees)
Refinement:The structure was refined using the CNX 2002 program. The R value is 23.7 for 15516 reflections in the resolution range 46.63 to 3.00 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1SEU

PubMed: 15801827




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