NDB ID: PD0557


Title:T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DCMP AT THE ELONGATION SITE
Molecular Description:
DNA POLYMERASE (E.C.2.7.7.7)/THIOREDOXIN 1/DNA Complex
Structural Features:B DOUBLE HELIX, OVERHANGING BASES, FLIPPED-OUT BASE
Nucleic Acid Sequence:
ChainP:Click here for sequence.
ChainT:Click here for sequence.
Protein Sequence:
ChainA: Click here for sequence.
ChainB: Click here for sequence.
Primary Citation:Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.
Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J. , 23, pp. 3452 - 3461, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   2
Cell Constants:
a = 105.514b = 215.112c = 52.035(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 20.2 for 40853 reflections in the resolution range 47.91 to 2.49 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1TKD

PubMed: 15297882




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