NDB ID: PD0564
Title:
HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE
Molecular Description:
5'-D(CpCpGpApCpTpGpCpGpCpApTpCpApGp
C)-3'/ 5'-D(GpCpTpGpApTpGpCpGpCp
C)-3'/ 5'-D(pGpTpCpGp
G)-3'/ DNA polymerase beta
Structural Features:
B DOUBLE HELIX, NICKED
Nucleic Acid Sequence:
Chain
D:
Click here for sequence.
Chain
P:
Click here for sequence.
Chain
T:
Click here for sequence.
Protein Sequence:
Chain
A:
Click here for sequence.
Primary Citation:
Krahn, J.M., Beard, W.A., Wilson, S.H.
Structural insights into DNA polymerase Beta deterrents for misincorporation support an induced-fit mechanism for fidelity
Structure
,
12
, pp. 1823 - 1832, 2004.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
1
2
1
1
Cell Constants:
a = 54.600
b = 79.700
c = 54.600
(Ångstroms)
= 90.00
= 106.40
= 90.00
(degrees)
Refinement:
The structure was refined using the CNS program. The R value is 21.2 for 13567 reflections in the resolution range 50.00 to 2.60 Ångstroms with Fobs > 0.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
1TVA
PubMed:
15458631
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