NDB ID: PD0606


Title:CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH NICKED DNA AND PYROPHOSPHATE
Molecular Description:5'-D(CpGpGpCpCpGpTpApCpTpG)-3'/ 5'-D(Cp
ApGpTpApCpG)-3'/ 5'-D(pGpCpCp
G)-3'/ DNA polymerase lambda
Structural Features:B DOUBLE HELIX, NICKED
Nucleic Acid Sequence:
ChainD:(DG) (DC) (DC) (DG)
ChainP:(DC) (DA) (DG) (DT) (DA) (DC) (DG)
ChainT:(DC) (DG) (DG) (DC) (DC) (DG) (DT) (DA) (DC) (DT) (DG)
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Kunkel, T.A., Pedersen, L.C.
A closed conformation for the Pol lambda catalytic cycle.
Nat.Struct.Mol.Biol. , 12, pp. 97 - 98, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 55.845b = 62.758c = 140.720(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 20.6 for 24337 reflections in the resolution range 41.72 to 2.20 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1XSP

PubMed: 15608652




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