NDB ID: PD0618


Title:ALPHA-GLUCOSYLTRANSFERASE IN COMPLEX WITH UDP AND A 13-MER DNA CONTAINING A HMU BASE AT 1.9 A RESOLUTION
Molecular Description:
DNA alpha-glucosyltransferase/DNA Complex
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainC:(DG) (DA) (DT) (DA) (DC) (DT) (5HU) (DA) (DG) (DA) (DT) (DA) (DG)
ChainD:(DC) (DT) (DA) (DT) (DC) (DT) (DG) (DA) (DG)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Lariviere, L., Sommer, N., Morera, S.
Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol. , 352, pp. 139 - 150, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 41.263b = 114.655c = 86.143(Ångstroms)
= 90.00 = 89.49 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 20.8 for 62256 reflections in the resolution range 20. to 1.9 Ångstroms with Fobs > 1. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1Y8Z

PubMed: 16081100




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey