NDB ID: PD0623


Title:T4DAM IN COMPLEX WITH ADOHCY AND 15-MER OLIGONUCLEOTIDE SHOWING SEMI-SPECIFIC AND SPECIFIC CONTACT
Molecular Description:
DNA adenine methylase (E.C. 2.1.1.72)/DNA Complex
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
Chains1,2,3,4,5,6,7,8,9,0:(DT) (DC) (DA) (DC) (DA) (DG) (DG) (DA) (DT) (DC) (DC) (DT) (DG) (DT) (DG)
Protein Sequence:
ChainsA,B,C,D,E,F: Click here for sequence.
Primary Citation:Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.
Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase.
Cell(Cambridge,Mass.) , 121, pp. 349 - 361, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 111.200b = 133.000c = 189.200(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 20.2 for 76093 reflections in the resolution range 34.78 to 2.69 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3
Enlarge Biological Assembly 4
Enlarge Biological Assembly 5
Enlarge Biological Assembly 6



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)123456

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1YFJ

PubMed: 15882618




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey