NDB ID: PD0624


Title:T4DAM IN COMPLEX WITH SINEFUNGIN AND 16-MER OLIGONUCLEOTIDE SHOWING SEMI-SPECIFIC AND SPECIFIC CONTACT AND FLIPPED BASE
Molecular Description:
DNA adenine methylase (E.C. 2.1.1.7)/DNA Complex
Structural Features:B DOUBLE HELIX, BULGES, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsF,G,H,I:(DT) (DC) (DA) (DC) (DA) (DG) (DG) (DA) (DT) (DC) (DC) (DT) (DG) (DT) (DG) (DA)
Protein Sequence:
ChainsA,B,D,E: Click here for sequence.
Primary Citation:Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.
Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase.
Cell(Cambridge,Mass.) , 121, pp. 349 - 361, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 87.871b = 117.648c = 87.865(Ångstroms)
= 90.00 = 90.02 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.4 for 32163 reflections in the resolution range 29.4 to 3.09 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3
Enlarge Biological Assembly 4



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)1234

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1YFL

PubMed: 15882618




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