NDB ID: PD0634


Title:MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA AND SOAKED ADENINE FREE BASE
Molecular Description:5'-D(ApApGpApCp(8OG)pTpGpGpApC)-3'/5'-D(
TpGpTpCpCpAp(HPD)pGpTpCpT)-3'/MutY
Structural Features:B DOUBLE HELIX, INTERNAL LOOP, OVERHANGING BASE
Nucleic Acid Sequence:
ChainB:(DA) (DA) (DG) (DA) (DC) (8OG) (DT) (DG) (DG) (DA) (DC)
ChainC:(DT) (DG) (DT) (DC) (DC) (DA) (HPD) (DG) (DT) (DC) (DT)
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.
Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
Nature , 427, pp. 652 - 656, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 37.977b = 85.730c = 141.635(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 22.9 for 16009 reflections in the resolution range 33.72 to 2.50 Ångstroms with Fobs > .0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1VRL

PubMed: 14961129




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