NDB ID: PD0668


Title:X-RAY STRUCTURE OF A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE BOUND TO THE NUCLEOSOMAL CORE
Molecular Description:Histone H3
H4
H2A
H2B/LANA Peptide/DNA
Structural Features:B DOUBLE HELIX, INTERNAL LOOP
Nucleic Acid Sequence:
ChainsI,J:(DA) (DT) (DC) (DA) (DA) (DT) (DA) (DT) (DC) (DC) (DA) (DC) (DC) (DT) (DG) (DC) (DA) (DG) (DA) (DT) (DT) (DC) (DT) (DA) (DC) (DC) (DA) (DA) (DA) (DA) (DG) (DT) (DG) (DT) (DA) (DT) (DT) (DT) (DG) (DG) (DA) (DA) (DA) (DC) (DT) (DG) (DC) (DT) (DC) (DC) (DA) (DT) (DC) (DA) (DA) (DA) (DA) (DG) (DG) (DC) (DA) (DT) (DG) (DT) (DT) (DC) (DA) (DG) (DC) (DG) (DG) (DA) (DA) (DT) (DT) (DC) (DC) (DG) (DC) (DT) (DG) (DA) (DA) (DC) (DA) (DT) (DG) (DC) (DC) (DT) (DT) (DT) (DT) (DG) (DA) (DT) (DG) (DG) (DA) (DG) (DC) (DA) (DG) (DT) (DT) (DT) (DC) (DC) (DA) (DA) (DA) (DT) (DA) (DC) (DA) (DC) (DT) (DT) (DT) (DT) (DG) (DG) (DT) (DA) (DG) (DA) (DA) (DT) (DC) (DT) (DG) (DC) (DA) (DG) (DG) (DT) (DG) (DG) (DA) (DT) (DA) (DT) (DT) (DG) (DA) (DT)
Protein Sequence:
ChainsA, B, C, D, KClick here for sequences.
Primary Citation:Barbera, A.J., Chodaparambil, J.V., Kelley-Clarke, B., Joukov, V., Walter, J.C., Luger, K., Kaye, K.M.
The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.
Science , 311, pp. 856 - 861, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 106.162b = 109.599c = 182.237(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 22.2 for 43460 reflections in the resolution range 50. to 2.9 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1ZLA

PubMed: 16469929




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