NDB ID: PD0673


Title:4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6C;17G]ICAP38 DNA
Molecular Description:Catabolite gene activator/DNA Complex
Structural Features:B DOUBLE HELIX, overhanging bases
Nucleic Acid Sequence:
ChainsW,Y:Click here for sequence.
ChainsX,Z:Click here for sequence.
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Napoli, A.A., Lawson, C.L., Ebright, R.H., Berman, H.M.
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J.Mol.Biol. , 357, pp. 173 - 183, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 61.778b = 77.745c = 154.813(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 22.5 for 42032 reflections in the resolution range 32.90 to 2.100 Ångstroms with Fobs > 0.00 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1ZRF

PubMed: 16427082




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