NDB ID: PD0711


Title:UNMODIFIED INSERTION TERNARY COMPLEX
Molecular Description:
Dpo4 polymerase IV (E.C.2.7.7.7)/DNA Complex
Structural Features:B DOUBLE HELIX, overhanging bases
Nucleic Acid Sequence:
ChainsD,H:Click here for sequence.
ChainsE,J:Click here for sequence.
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.
Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion
Plos Biol. , 4, pp. 1 - 18, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 52.584b = 101.758c = 112.286(Ångstroms)
= 90.00 = 94.72 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5.2.0005 program. The R value is 22.4 for 26374 reflections in the resolution range 20.00 to 2.80 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2ATL

PubMed: 16379496




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