NDB ID: PD1010


Title:PHI29 DNA POLYMERASE COMPLEXED WITH SINGLE-STRANDED DNA
Molecular Description:DNA polymerase (E.C.2.7.7.7)/DNA
Structural Features:SINGLE STRAND
Nucleic Acid Sequence:
ChainsJ,Y,D,E,L:(DG) (DG) (DA) (DC) (DT) (DT) (DT)
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.
Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases
Embo J. , 26, pp. 3494 - 3505, 2007.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 54.195b = 200.178c = 66.989(Ångstroms)
= 90.00 = 109.40 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5.2 program. The R value is 16.4 for 163498 reflections in the resolution range 40.59 to 1.60 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2PY5

PubMed: 17611604




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