NDB ID: PD1017


Title:STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE BOUND TO A 5' PHOSPHORYLATED NICK
Molecular Description:Chlorella virus DNA ligase/DNA Complex
Structural Features:B DOUBLE HELIX, Nicked
Nucleic Acid Sequence:
ChainB:Click here for sequence.
ChainD:Click here for sequence.
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Nair, P.A., Nandakumar, J., Smith, P., Odell, M., Lima, C.D., Shuman, S.
Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol. , 14, pp. 770 - 778, 2007.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 66.301b = 81.290c = 96.418(Ångstroms)
= 90.000 = 90.000 = 90.000(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 21.4 for 23077 reflections in the resolution range 38.990 to 2.300 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2Q2T

PubMed: 17618295




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