NDB ID: PD1018


Title:STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX
Molecular Description:Chlorella virus DNA ligase/DNA Complex
Structural Features:B DOUBLE HELIX, Nicked
Nucleic Acid Sequence:
ChainsE,G,I,K:(DT) (DT) (DC) (DC) (DG) (DA) (DT) (DA) (DG) (DT) (DG) (DG) (DG) (DG) (DT) (DC) (DG) (DC) (DA) (DA) (DT)
Protein Sequence:
ChainsA,B,C,D: Click here for sequence.
Primary Citation:Nair, P.A., Nandakumar, J., Smith, P., Odell, M., Lima, C.D., Shuman, S.
Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol. , 14, pp. 770 - 778, 2007.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 66.475b = 92.895c = 89.633(Ångstroms)
= 70.320 = 78.450 = 89.870(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 24.9 for 38001 reflections in the resolution range 24.880 to 3.000 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3
Enlarge Biological Assembly 4



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)1234

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2Q2U

PubMed: 17618295




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