NDB ID: PH0006


Title:RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Molecular Description:
DNA-directed RNA polymerase II largest subunit (E.C.2.7.7.6)/DNA-directed RNA polymerase II 140 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 45 kDa polypeptide (E.C.2.7.7.6)/DNA-direct
Structural Features:A DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainR: A U C G A G A G G A
ChainT: (DA) (DC) (DG) (DA) (DT) (DC) (DC) (DT) (DC) (DT) (DC) (DG) (DA) (DT)
Protein Sequence:
ChainsA, B, C, E, F, H, I, J, K, LClick here for sequences.
Primary Citation:Westover, K.D., Bushnell, D.A., Kornberg, R.D.
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
Cell (Cambridge,Mass.) , 119, pp. 481 - 489, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 169.647b = 222.338c = 194.316(Ångstroms)
= 90.00 = 101.67 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:PEG 6000 Ammonium hydrogen phosphate, sodium dihydrogen phosphate, dioxane, DTT, H2O
Reservoir:PEG 6000 Ammonium hydrogen phosphate, sodium dihydrogen phosphate, H2O
Refinement:The structure was refined using the CNS 1.1 program. The R value is 34.9 for 50043 reflections in the resolution range 40 to 4.25 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1R9S

PubMed: 15537538




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