NDB ID: PH0007


Title:RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
Molecular Description:
DNA-directed RNA polymerase II largest subunit (E.C.2.7.7.6)/DNA-directed RNA polymerase II 140 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 45 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I
II

and III 27 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I
II

and III 23 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I
II

and III 14.5 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 14.2 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I
II

and III 8.3 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 13.6 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I
II

and III 7.7 kDa polypeptide (E.C.2.7.7.6)/DNA/RNA Complex
Structural Features:DOUBLE HELIX
Nucleic Acid Sequence:
ChainN:Click here for sequence.
ChainR:Click here for sequence.
ChainT:Click here for sequence.
Protein Sequence:
ChainsA, B, C, E, F, H, I, J, K, LClick here for sequences.
Primary Citation:Westover, K.D., Bushnell, D.A., Kornberg, R.D.
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
Cell(Cambridge,Mass.) , 119, pp. 481 - 489, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 168.846b = 222.958c = 193.602(Ångstroms)
= 90.00 = 101.17 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 23.0 for reflections in the resolution range 40. to 3.5 Ångstroms .

Biological Assembly 1
Other Views
Asymmetric Unit
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1R9T

PubMed: 15537538




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