<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            AUCGAGAGGA 
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>A</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>31.884 -3.515 19.796</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>U</base-type>
               <atom serial="20">
                  <atom-type> P  </atom-type>
                     <coordinates>31.668 -4.435 21.097</coordinates>
               </atom>
               <atom serial="28">
                  <atom-type> O3'</atom-type>
                     <coordinates>36.109 -4.749 23.601</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="40">
                  <atom-type> P  </atom-type>
                     <coordinates>35.274 -5.756 24.539</coordinates>
               </atom>
               <atom serial="48">
                  <atom-type> O3'</atom-type>
                     <coordinates>37.453 -4.249 29.282</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="60">
                  <atom-type> P  </atom-type>
                     <coordinates>37.065 -5.688 29.875</coordinates>
               </atom>
               <atom serial="68">
                  <atom-type> O3'</atom-type>
                     <coordinates>36.349 -5.196 35.265</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>35.434 -6.117 36.183</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>31.748 -6.322 39.494</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="105">
                  <atom-type> P  </atom-type>
                     <coordinates>31.764 -7.933 39.459</coordinates>
               </atom>
               <atom serial="113">
                  <atom-type> O3'</atom-type>
                     <coordinates>26.701 -8.804 41.546</coordinates>
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            </base>
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               <position>7</position>
               <base-type>A</base-type>
               <atom serial="128">
                  <atom-type> P  </atom-type>
                     <coordinates>25.658 -10.001 41.456</coordinates>
               </atom>
               <atom serial="136">
                  <atom-type> O3'</atom-type>
                     <coordinates>21.246 -11.172 40.798</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>G</base-type>
               <atom serial="150">
                  <atom-type> P  </atom-type>
                     <coordinates>21.060 -12.763 40.682</coordinates>
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               <atom serial="158">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.868 -15.660 38.047</coordinates>
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               <base-type>G</base-type>
               <atom serial="173">
                  <atom-type> P  </atom-type>
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               <atom serial="181">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.447 -20.322 34.679</coordinates>
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               <base-type>A</base-type>
               <atom serial="196">
                  <atom-type> P  </atom-type>
                     <coordinates>17.042 -21.772 34.956</coordinates>
               </atom>
               <atom serial="204">
                  <atom-type> O3'</atom-type>
                     <coordinates>18.082 -26.716 32.699</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>3</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>6</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>6</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 29.464</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 58.929</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 88.393</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 137.500</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 186.607</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 284.821</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 333.929</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 383.036</coordinates>
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               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>0.000 432.143</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>14</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="14" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
           11   12   13   14 
         </numbering-table>
         <seq-data>
            acgauccucu cgau
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>10</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>11</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>12</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>13</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>14</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>a</base-type>
               <atom serial="223">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>2</position>
               <base-type>c</base-type>
               <atom serial="236">
                  <atom-type> P  </atom-type>
                     <coordinates>47.492 -19.997 32.805</coordinates>
               </atom>
               <atom serial="244">
                  <atom-type> O3'</atom-type>
                     <coordinates>42.205 -22.662 33.024</coordinates>
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            </base>
            <base>
               <position>3</position>
               <base-type>g</base-type>
               <atom serial="255">
                  <atom-type> P  </atom-type>
                     <coordinates>40.773 -22.180 32.455</coordinates>
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               <atom serial="263">
                  <atom-type> O3'</atom-type>
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            <base>
               <position>4</position>
               <base-type>a</base-type>
               <atom serial="277">
                  <atom-type> P  </atom-type>
                     <coordinates>35.026 -22.498 34.389</coordinates>
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               <atom serial="285">
                  <atom-type> O3'</atom-type>
                     <coordinates>33.720 -24.280 31.050</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>u</base-type>
               <atom serial="298">
                  <atom-type> P  </atom-type>
                     <coordinates>34.013 -22.858 30.318</coordinates>
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               <atom serial="306">
                  <atom-type> O3'</atom-type>
                     <coordinates>31.218 -22.859 26.070</coordinates>
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            <base>
               <position>6</position>
               <base-type>c</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>c</base-type>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>c</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="384">
                  <atom-type> O3'</atom-type>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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            <str-annotation>
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                  <segment>
                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>4</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG3</seg-name>
                     <base-id-5p><base-id><position>12</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>14</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>117.857 550.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>117.857 520.536</coordinates>
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                  <base-id><position>3</position></base-id>
                  <coordinates>117.857 491.071</coordinates>
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                  <base-id><position>4</position></base-id>
                  <coordinates>117.857 461.607</coordinates>
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               <ss-base-coord>
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                  <coordinates>117.857 432.143</coordinates>
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                  <base-id><position>6</position></base-id>
                  <coordinates>117.857 383.036</coordinates>
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                  <coordinates>117.857 235.714</coordinates>
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                  <coordinates>117.857 137.500</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>117.857 88.393</coordinates>
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                  <base-id><position>12</position></base-id>
                  <coordinates>117.857 58.929</coordinates>
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               <ss-base-coord>
                  <base-id><position>13</position></base-id>
                  <coordinates>117.857 29.464</coordinates>
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               <ss-base-coord>
                  <base-id><position>14</position></base-id>
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         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <length>2</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
