NDB ID: PH0012


Title:CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX OF DEOXYNUCLEOTIDE OVERHANG
Molecular Description:
Eukaryotic translation initiation factor 2C 1/5'-R(
CpGpUpGpApCpU)-D(pCpT)-3'
Structural Features:DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Ma, J.B., Ye, K., Patel, D.J.
Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature , 429, pp. 318 - 322, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 64
Cell Constants:
a = 100.051b = 100.051c = 34.438(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:PEG 1000 potassium chloride, HEPES-NaOH, Dithiothreitol
Refinement:The structure was refined using the CNS 1.1 program. The R value is 22.1 for 5873 reflections in the resolution range 19.71 to 2.60 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1SI2

PubMed: 15152257




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