<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4    5    6 
         </numbering-table>
         <seq-data>
            UCGACA
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>25.069 35.230 -1.822</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>26.033 34.422 -0.822</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>21.521 32.439 1.568</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="38">
                  <atom-type> P  </atom-type>
                     <coordinates>21.466 31.625 2.948</coordinates>
               </atom>
               <atom serial="46">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.308 28.770 4.121</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>17.757 27.840 5.351</coordinates>
               </atom>
               <atom serial="69">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.692 23.022 5.607</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>16.222 22.202 6.883</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.540 17.190 6.991</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>A</base-type>
               <atom serial="103">
                  <atom-type> P  </atom-type>
                     <coordinates>17.277 16.622 8.299</coordinates>
               </atom>
               <atom serial="111">
                  <atom-type> O3'</atom-type>
                     <coordinates>21.766 13.043 8.500</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 63.462</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 169.231</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 380.769</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 486.538</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4 
            5    6 
         </numbering-table>
         <seq-data>
            augu cg
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>a</base-type>
               <atom serial="130">
                  <atom-type> O3'</atom-type>
                     <coordinates>35.615 22.082 2.834</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>u</base-type>
               <atom serial="143">
                  <atom-type> P  </atom-type>
                     <coordinates>36.233 20.750 2.169</coordinates>
               </atom>
               <atom serial="151">
                  <atom-type> O3'</atom-type>
                     <coordinates>33.474 16.191 0.313</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>g</base-type>
               <atom serial="163">
                  <atom-type> P  </atom-type>
                     <coordinates>32.878 15.992 -1.168</coordinates>
               </atom>
               <atom serial="171">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.128 12.970 -1.451</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>u</base-type>
               <atom serial="185">
                  <atom-type> P  </atom-type>
                     <coordinates>27.524 12.521 -2.866</coordinates>
               </atom>
               <atom serial="193">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.541 14.889 -4.919</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>c</base-type>
               <atom serial="205">
                  <atom-type> P  </atom-type>
                     <coordinates>21.690 15.316 -6.205</coordinates>
               </atom>
               <atom serial="213">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.547 17.561 -5.118</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>g</base-type>
               <atom serial="224">
                  <atom-type> P  </atom-type>
                     <coordinates>15.575 18.207 -6.218</coordinates>
               </atom>
               <atom serial="232">
                  <atom-type> O3'</atom-type>
                     <coordinates>12.730 23.027 -5.212</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>253.846 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>253.846 486.538</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>253.846 380.769</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>253.846 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>253.846 169.231</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>253.846 63.462</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <length>5</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
