<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4    5    6 
         </numbering-table>
         <seq-data>
            UCGACA
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="2">
                  <atom-type> P  </atom-type>
                     <coordinates>28.311 29.122 -4.068</coordinates>
               </atom>
               <atom serial="10">
                  <atom-type> O3'</atom-type>
                     <coordinates>25.652 33.239 -2.637</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="22">
                  <atom-type> P  </atom-type>
                     <coordinates>25.305 32.600 -1.205</coordinates>
               </atom>
               <atom serial="30">
                  <atom-type> O3'</atom-type>
                     <coordinates>20.420 32.938 0.628</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="42">
                  <atom-type> P  </atom-type>
                     <coordinates>20.442 32.054 1.970</coordinates>
               </atom>
               <atom serial="50">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.549 28.944 3.334</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="65">
                  <atom-type> P  </atom-type>
                     <coordinates>17.147 28.105 4.568</coordinates>
               </atom>
               <atom serial="73">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.425 23.166 5.103</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="87">
                  <atom-type> P  </atom-type>
                     <coordinates>16.019 22.448 6.406</coordinates>
               </atom>
               <atom serial="95">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.525 17.388 6.652</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>A</base-type>
               <atom serial="107">
                  <atom-type> P  </atom-type>
                     <coordinates>17.245 16.874 7.988</coordinates>
               </atom>
               <atom serial="115">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.078 13.729 8.753</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 63.462</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 169.231</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 380.769</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 486.538</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4 
            5    6 
         </numbering-table>
         <seq-data>
            augu cg
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>a</base-type>
               <atom serial="134">
                  <atom-type> O3'</atom-type>
                     <coordinates>35.333 22.460 2.383</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>u</base-type>
               <atom serial="147">
                  <atom-type> P  </atom-type>
                     <coordinates>36.030 21.152 1.748</coordinates>
               </atom>
               <atom serial="155">
                  <atom-type> O3'</atom-type>
                     <coordinates>33.348 16.542 -0.172</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>g</base-type>
               <atom serial="167">
                  <atom-type> P  </atom-type>
                     <coordinates>32.773 16.353 -1.661</coordinates>
               </atom>
               <atom serial="175">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.047 13.210 -1.888</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>u</base-type>
               <atom serial="189">
                  <atom-type> P  </atom-type>
                     <coordinates>27.350 12.782 -3.263</coordinates>
               </atom>
               <atom serial="197">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.251 15.044 -5.341</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>c</base-type>
               <atom serial="209">
                  <atom-type> P  </atom-type>
                     <coordinates>21.417 15.421 -6.652</coordinates>
               </atom>
               <atom serial="217">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.232 17.560 -5.496</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>g</base-type>
               <atom serial="228">
                  <atom-type> P  </atom-type>
                     <coordinates>15.209 18.081 -6.611</coordinates>
               </atom>
               <atom serial="236">
                  <atom-type> O3'</atom-type>
                     <coordinates>12.266 22.924 -5.971</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>253.846 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>253.846 486.538</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>253.846 380.769</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>253.846 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>253.846 169.231</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>253.846 63.462</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <length>5</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
