NDB ID: PR0069


Title:CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
Molecular Description:
Valyl-tRNA synthetase (E.C.6.1.1.9)/TRNA (VAL) Complex
Structural Features:T SINGLE STRAND
Nucleic Acid Sequence:
ChainsC,D:G G G C G G C U A G C U C A G C G G A A G A G C G C U C G C C U C A C A C G C G A G A G G U C G U A G G U U C A A G U C C U A C G C C G C C C A C C A
Protein Sequence:
ChainsA,B: Click here for sequence.
Primary Citation:Fukai, S., Nureki, O., Sekine, S.-I., Shimada, A., Vassylyev, D.G., Yokoyama, S.
Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA , 9, pp. 100 - 111, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 42   21   2
Cell Constants:
a = 411.810b = 411.810c = 81.970(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 24.8 for 150310 reflections in the resolution range 40.00 to 2.90 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1IVS

PubMed: 12554880




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