NDB ID: PR0105


Title:CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION THROUGH A COMBINATION OF RIGID DOCKING AND INDUCED FIT
Molecular Description:
tRNA pseudouridine synthase B (E.C. 4.2.1.70)/RNA Complex
Structural Features:RH DOUBLE HELIX, LOOPS, HAIRPIN LOOP, BULGES, FLIPPED-OUT BASES,
Nucleic Acid Sequence:
ChainC: C U G U G U (FHU) C G A U C C A C A G
ChainsD, E: C U G U G U U C G A U C C A C A G
Protein Sequence:
ChainA: Click here for sequence.
Primary Citation:Pan, H., Agarwalla, S., Moustakas, D.T., Finer-Moore, J., Stroud, R.M.
Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA Recognition Through a Combination of Rigid Docking and Induced Fit
Proc.Natl.Acad.Sci.USA , 100, pp. 12648 - 12653, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 98.862b = 159.337c = 44.545(Ångstroms)
= 90.00 = 97.77 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:ammonium sulfate, magnesium sulfate, sodium cacodylate, H2O
Reservoir:ammonium sulfate, magnesium sulfate, sodium cacodylate, H2O
Refinement:The structure was refined using the CNS program. The R value is 22.3 for 38642 reflections in the resolution range 15 to 2.1 Ångstroms with Fobs > 2.1 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
RNA View
RNAML File
Enlarge Biological Unit 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1R3E

PubMed: 14566049




ndbadmin@ndbserver.rutgers.edu
©1995-2007 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey