NDB ID: PR0122


Title:HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH MG2+ BOUND
Molecular Description:
small nuclear ribonucleoprotein A/precursor form of the Hepatitis Delta virus ribozyme complex
Structural Features:SINGLE STRAND, loops, bulges, BASE TRIPLET,FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainR:G A U G G C C G G C A U G G U C C C A G C C U C C U C G C U G G C G C C G G C U G G G C A A C A C C A U U G C A C U C C G G U G G U G A A U G G G A C U
Protein Sequence:
ChainP: Click here for sequence.
Primary Citation:Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.
A Conformational Switch controls hepatitis delta virus ribozyme catalysis
Nature , 429, pp. 201 - 205, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 108.731b = 108.731c = 191.726(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 25.5 for 21056 reflections in the resolution range 31.39 to 2.20 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1SJ3

PubMed: 15141216

FR3D annotation of basepairs, stacking, motifs, and other interactions for: 1SJ3




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