<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>12</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="12" comment="sequence number in pdb file">
            6    7    8    9   10   11   12   13   14   15 
           16   17 
         </numbering-table>
         <seq-data>
            GACCGGAGUG UC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>56.877 76.405 -3.281</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>56.088 76.158 -4.654</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>55.098 79.577 -8.410</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="43">
                  <atom-type> P  </atom-type>
                     <coordinates>54.596 78.767 -9.711</coordinates>
               </atom>
               <atom serial="51">
                  <atom-type> O3'</atom-type>
                     <coordinates>56.009 80.171 -14.535</coordinates>
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            <base>
               <position>4</position>
               <base-type>C</base-type>
               <atom serial="63">
                  <atom-type> P  </atom-type>
                     <coordinates>55.465 79.111 -15.613</coordinates>
               </atom>
               <atom serial="71">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.963 78.520 -20.083</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>57.100 77.628 -21.107</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>58.488 72.854 -23.426</coordinates>
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            </base>
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               <position>6</position>
               <base-type>G</base-type>
               <atom serial="106">
                  <atom-type> P  </atom-type>
                     <coordinates>57.420 73.314 -24.518</coordinates>
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               <atom serial="114">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.092 67.342 -24.911</coordinates>
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               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="137">
                  <atom-type> O3'</atom-type>
                     <coordinates>59.076 61.018 -24.791</coordinates>
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               <position>8</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>64.695 59.455 -22.319</coordinates>
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               <atom serial="182">
                  <atom-type> O3'</atom-type>
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            </base>
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               <position>10</position>
               <base-type>G</base-type>
               <atom serial="194">
                  <atom-type> P  </atom-type>
                     <coordinates>68.189 59.795 -17.141</coordinates>
               </atom>
               <atom serial="202">
                  <atom-type> O3'</atom-type>
                     <coordinates>69.485 57.531 -12.213</coordinates>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>70.880 56.714 -12.149</coordinates>
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               <atom serial="225">
                  <atom-type> O3'</atom-type>
                     <coordinates>71.356 51.825 -9.591</coordinates>
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               <position>12</position>
               <base-type>C</base-type>
               <atom serial="237">
                  <atom-type> P  </atom-type>
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               <atom serial="245">
                  <atom-type> O3'</atom-type>
                     <coordinates>73.176 45.839 -9.270</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>5</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>7</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>453.357 141.206</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>416.465 181.474</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>379.572 221.742</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>342.680 262.010</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>320.544 286.171</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>298.409 310.332</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>276.273 334.492</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 218.451</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 163.838</coordinates>
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               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>0.000 109.226</coordinates>
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               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>0.000 54.613</coordinates>
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               <ss-base-coord>
                  <base-id><position>12</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>15</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="15" comment="sequence number in pdb file">
           50   51   52   53   54   55   56   57 
           58   59   60   61   62   63   64 
         </numbering-table>
         <seq-data>
            GACGCAGA GAUGGUC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="262">
                  <atom-type> O3'</atom-type>
                     <coordinates>60.576 42.064 -19.862</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="277">
                  <atom-type> P  </atom-type>
                     <coordinates>59.192 42.515 -19.171</coordinates>
               </atom>
               <atom serial="285">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.752 43.143 -13.703</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="299">
                  <atom-type> P  </atom-type>
                     <coordinates>57.226 43.294 -12.168</coordinates>
               </atom>
               <atom serial="307">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.408 46.988 -8.900</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="319">
                  <atom-type> P  </atom-type>
                     <coordinates>57.345 47.913 -7.573</coordinates>
               </atom>
               <atom serial="327">
                  <atom-type> O3'</atom-type>
                     <coordinates>57.217 53.440 -6.935</coordinates>
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            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="342">
                  <atom-type> P  </atom-type>
                     <coordinates>55.820 54.232 -7.153</coordinates>
               </atom>
               <atom serial="350">
                  <atom-type> O3'</atom-type>
                     <coordinates>56.088 59.399 -8.664</coordinates>
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               <position>6</position>
               <base-type>A</base-type>
               <atom serial="362">
                  <atom-type> P  </atom-type>
                     <coordinates>54.616 59.938 -9.018</coordinates>
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               <atom serial="370">
                  <atom-type> O3'</atom-type>
                     <coordinates>53.322 62.099 -13.858</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="384">
                  <atom-type> P  </atom-type>
                     <coordinates>51.740 61.871 -13.832</coordinates>
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               <atom serial="392">
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            <base>
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               <base-type>A</base-type>
               <atom serial="407">
                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="429">
                  <atom-type> P  </atom-type>
                     <coordinates>50.643 66.448 -10.827</coordinates>
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               <atom serial="437">
                  <atom-type> O3'</atom-type>
                     <coordinates>55.476 66.759 -13.717</coordinates>
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            </base>
            <base>
               <position>10</position>
               <base-type>A</base-type>
               <atom serial="452">
                  <atom-type> P  </atom-type>
                     <coordinates>56.799 67.566 -13.289</coordinates>
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               <atom serial="460">
                  <atom-type> O3'</atom-type>
                     <coordinates>60.181 63.988 -11.623</coordinates>
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            </base>
            <base>
               <position>11</position>
               <base-type>U</base-type>
               <atom serial="474">
                  <atom-type> P  </atom-type>
                     <coordinates>61.141 65.175 -11.073</coordinates>
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               <atom serial="482">
                  <atom-type> O3'</atom-type>
                     <coordinates>66.241 63.986 -12.990</coordinates>
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            </base>
            <base>
               <position>12</position>
               <base-type>G</base-type>
               <atom serial="494">
                  <atom-type> P  </atom-type>
                     <coordinates>67.051 65.294 -12.500</coordinates>
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               <atom serial="502">
                  <atom-type> O3'</atom-type>
                     <coordinates>69.082 68.328 -15.794</coordinates>
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            <base>
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               <base-type>G</base-type>
               <atom serial="517">
                  <atom-type> P  </atom-type>
                     <coordinates>69.833 69.336 -14.779</coordinates>
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               <atom serial="525">
                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>70.441 81.106 -13.699</coordinates>
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               <atom serial="568">
                  <atom-type> O3'</atom-type>
                     <coordinates>68.243 85.119 -10.057</coordinates>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>7</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>6</position></base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id><position>7</position></base-id>
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                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>9</position></base-id>
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                  <base-id-3p>
                     <base-id><position>10</position></base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>6</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>11</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>131.071 0.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>131.071 54.613</coordinates>
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                  <coordinates>131.071 109.226</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>131.071 163.838</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>131.071 218.451</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>306.510 495.517</coordinates>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>328.645 471.356</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>350.781 447.195</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>372.916 423.034</coordinates>
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               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>395.052 398.873</coordinates>
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               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>417.187 374.713</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>12</position></base-id>
                  <coordinates>439.323 350.552</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>13</position></base-id>
                  <coordinates>476.215 310.284</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>14</position></base-id>
                  <coordinates>513.108 270.016</coordinates>
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               <ss-base-coord>
                  <base-id><position>15</position></base-id>
                  <coordinates>550.000 229.748</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>15</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>14</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>13</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>12</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>H</edge-3p>
                  <bond-orientation>t</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>15</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <length>5</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
