<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCuGGUCCGA 
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> IU</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.444 13.566 32.296</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>6.475 14.808 33.324</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.956 14.045 38.341</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>u</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>4.913 15.410 39.208</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.600 15.225 44.630</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="62">
                  <atom-type> P  </atom-type>
                     <coordinates>5.532 16.401 45.734</coordinates>
               </atom>
               <atom serial="70">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.315 19.225 48.947</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="85">
                  <atom-type> P  </atom-type>
                     <coordinates>9.451 20.816 48.824</coordinates>
               </atom>
               <atom serial="93">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.920 22.998 50.714</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>U</base-type>
               <atom serial="108">
                  <atom-type> P  </atom-type>
                     <coordinates>13.954 24.587 50.483</coordinates>
               </atom>
               <atom serial="116">
                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>16.993 29.205 49.277</coordinates>
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               <atom serial="136">
                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>17.834 33.719 45.775</coordinates>
               </atom>
               <atom serial="156">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.118 36.271 41.155</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="168">
                  <atom-type> P  </atom-type>
                     <coordinates>16.311 37.421 41.943</coordinates>
               </atom>
               <atom serial="176">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.094 40.195 39.332</coordinates>
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            </base>
            <base>
               <position>10</position>
               <base-type>A</base-type>
               <atom serial="191">
                  <atom-type> P  </atom-type>
                     <coordinates>13.631 41.671 39.665</coordinates>
               </atom>
               <atom serial="199">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.457 45.639 41.080</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>8</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>10</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>210.443 39.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>210.443 104.762</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>210.443 170.238</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>210.443 235.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>210.443 301.190</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>210.443 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>210.443 432.143</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>210.443 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>210.443 510.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>210.443 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            uuGACuAGCC 
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> IU</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> IU</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> IU</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>u</base-type>
               <atom serial="218">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.018 31.252 32.514</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>u</base-type>
               <atom serial="231">
                  <atom-type> P  </atom-type>
                     <coordinates>12.331 30.551 31.892</coordinates>
               </atom>
               <atom serial="239">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.450 25.629 29.516</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="252">
                  <atom-type> P  </atom-type>
                     <coordinates>12.907 25.049 29.840</coordinates>
               </atom>
               <atom serial="260">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.260 24.825 32.435</coordinates>
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            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="275">
                  <atom-type> P  </atom-type>
                     <coordinates>18.099 23.501 32.774</coordinates>
               </atom>
               <atom serial="283">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.397 23.653 35.288</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="297">
                  <atom-type> P  </atom-type>
                     <coordinates>22.553 22.064 35.489</coordinates>
               </atom>
               <atom serial="305">
                  <atom-type> O3'</atom-type>
                     <coordinates>24.490 20.585 40.150</coordinates>
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            </base>
            <base>
               <position>6</position>
               <base-type>u</base-type>
               <atom serial="317">
                  <atom-type> P  </atom-type>
                     <coordinates>24.588 18.982 40.248</coordinates>
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               <atom serial="325">
                  <atom-type> O3'</atom-type>
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            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="338">
                  <atom-type> P  </atom-type>
                     <coordinates>23.433 14.872 44.397</coordinates>
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               <atom serial="346">
                  <atom-type> O3'</atom-type>
                     <coordinates>20.377 11.484 46.795</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>G</base-type>
               <atom serial="360">
                  <atom-type> P  </atom-type>
                     <coordinates>20.525 10.115 45.966</coordinates>
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               <atom serial="368">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.963 7.111 45.548</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>C</base-type>
               <atom serial="383">
                  <atom-type> P  </atom-type>
                     <coordinates>15.773 5.875 44.532</coordinates>
               </atom>
               <atom serial="391">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.144 4.124 43.220</coordinates>
               </atom>
            </base>
            <base>
               <position>10</position>
               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="411">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.860 0.700 38.790</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>2</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>10</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>10</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>53.300 510.714</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>53.300 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
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               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>53.300 366.667</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>53.300 301.190</coordinates>
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               <ss-base-coord>
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               <ss-base-coord>
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                  <coordinates>53.300 39.286</coordinates>
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               <ss-base-coord>
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                  <coordinates>53.300 0.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="3">
      <sequence>
         <numbering-system id="3" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>5</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="5" comment="sequence number in pdb file">
            6    7    8    9   10 
         </numbering-table>
         <seq-data>
            UCCGA
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="428">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.213 43.769 46.557</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="440">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.936 42.772 45.320</coordinates>
               </atom>
               <atom serial="448">
                  <atom-type> O3'</atom-type>
                     <coordinates>-14.428 42.543 43.505</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="460">
                  <atom-type> P  </atom-type>
                     <coordinates>-14.982 41.830 42.183</coordinates>
               </atom>
               <atom serial="468">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.815 36.759 41.208</coordinates>
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            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="480">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.360 37.419 39.820</coordinates>
               </atom>
               <atom serial="488">
                  <atom-type> O3'</atom-type>
                     <coordinates>-19.482 37.221 38.732</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="503">
                  <atom-type> P  </atom-type>
                     <coordinates>-19.798 37.351 40.300</coordinates>
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               <atom serial="511">
                  <atom-type> O3'</atom-type>
                     <coordinates>-19.880 33.421 38.842</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>5</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 90.132</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 90.132</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 90.132</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 90.132</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 90.132</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
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                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <length>7</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
