NDB ID: RR0115


Title:CRYSTAL STRUCTURE OF VIRGINIAMYCIN M AND S BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Molecular Description:50S RIBOSOMAL PROTEIN L37E
50S RIBOSOMAL PROTEIN L39E
50S RIBOSOMAL PROTEIN L44E
VIRGINIAMYCIN S1
50S RIBOSOMAL PROTEIN L2P
50S RIBOSOMAL PROTEIN L3P
50S RIBOSOMAL PROTEIN L4E
50S RIBOSOMAL PROTEIN L5P
50S RIBOSOMAL PROTEIN L6P
50S RIBOSOMAL PROTEIN L7AE
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
50S RIBOSOMAL PROTEIN L10E
50S RIBOSOMAL PROTEIN L11P
50S RIBOSOMAL PROTEIN L13P
50S RIBOSOMAL PROTEIN L14P
50S RIBOSOMAL PROTEIN L15P
50S RIBOSOMAL PROTEIN L15E
50S RIBOSOMAL PROTEIN L18P
50S RIBOSOMAL PROTEIN L18E
50S RIBOSOMAL PROTEIN L19E
50S RIBOSOMAL PROTEIN L21E
50S RIBOSOMAL PROTEIN L22P
50S RIBOSOMAL PROTEIN L23P
50S RIBOSOMAL PROTEIN L24P
50S RIBOSOMAL PROTEIN L24E
50S RIBOSOMAL PROTEIN L29P
50S RIBOSOMAL PROTEIN L30P
50S RIBOSOMAL PROTEIN L31E
50S RIBOSOMAL PROTEIN L32E
50S RIBOSOMAL PROTEIN L37AE/RNA Complex
VIRGINIAMYCIN M1
Structural Features:SINGLE STRAND
Nucleic Acid Sequence:
Chain0:Click here for sequence.
Chain9:Click here for sequence.
Protein Sequence:
Chains1, 2, 3, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, ZClick here for sequences.
Primary Citation:TU, D., Blaha, G., Moore, P.B., Steitz, T.A.
Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance.
Cell(Cambridge,Mass.) , 121, pp. 257, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21
Cell Constants:
a = 212.583b = 299.758c = 573.560(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 17.5 for 417595 reflections in the resolution range 29.99 to 2.80 Ångstroms with Fobs > 0.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1YIT

PubMed: 15851032

FR3D annotation of basepairs, stacking, motifs, and other interactions for: 1YIT




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