NDB ID: TR0004


Title:CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX
Molecular Description:PHENYLALANINE TRANSFER RNA
NEOMYCIN
Structural Features:T SINGLE STRAND
Nucleic Acid Sequence:
ChainA: G C G G A U U U A G C U C A G U U G G G A G A G C G C C A G A C U G A A (YG) A U C U G G A G G U C C U G U G (5MU) U C G A U C C A C A G A A U U C G C A C C A
Primary Citation:Mikkelsen, N.E., Johansson, K., Virtanen, A., Kirsebom, L.A.
Aminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex.
Nat.Struct.Biol. , 8, pp. 510 - 514, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 54.900b = 32.900c = 63.100(Ångstroms)
= 90.00 = 90.50 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:MgCl, MPD, Cacodylate
Reservoir:MPD
Refinement:The structure was refined using the CNS 1.0 program. The R value is 22.8 for 6515 reflections in the resolution range 20 to 2.6 Ångstroms with I > 0 sigma(I).

Biological Unit 1
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RNAML File
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1I9V

PubMed: 11373618




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