NDB ID: UD0008


Title:STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
Molecular Description:5'-D(CpCpGpGpTpApCpCpGpG)-3'
Structural Features:DOUBLE HELIX, FOUR-WAY JUNCTION
Nucleic Acid Sequence:
ChainsA, B, C, D: (DC) (DC) (DG) (DG) (DT) (DA) (DC) (DC) (DG) (DG)
Primary Citation:Eichman, B.F., Vargason, J.M., Mooers, B.H., Ho, P.S.
The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA , 97, pp. 3971 - 3976, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 66.500b = 23.500c = 76.900(Ångstroms)
= 90.00 = 114.80 = 90.00(degrees)
Crystallization Conditions:
Drop:CaCl2, SODIUM CACODYLATE, MPD
Reservoir:MPD
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 23 for 5723 reflections in the resolution range 8.00 to 2.10 Ångstroms with Fobs > 3.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DCW

PubMed: 10760268




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